BioMed Protection

SARS-CoV-2 mutation estimator

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The ISM-based phylogenetic tree of the spike protein (subunit 1, S1) from SARS-CoV2 viruses with 258 SNP mutations

SNP-sarscov2-tree

This phylogenetic tree encompasses two clusters of viruses. In the cluster B are viruses corresponding to the first prototype SARS-CoV-2 isolated in Wuhan, China, and viruses in the cluster A predominate in Europe and the USA and contain the mutation D614G with increased virulence. The presented ISM-based phylogenetic tree will be used as a standard tree in the assessment of the biological effect of mutations in S1 from SARS-Cov-2.
In the tool itself this tree will be represented as the smaller clustered version of 78 sequences.